Monthly Archives: August 2022

Using Artificial Intelligence to Predict Life-Threatening Bacterial Disease in Dogs

Leptospirosis, a disease that dogs can get from drinking water contaminated with Leptospira bacteria, can cause kidney failure, liver disease and severe bleeding into the lungs. Early detection of the disease is crucial and may mean the difference between life and death.

Veterinarians and researchers at the University of California, Davis, School of Veterinary Medicine have discovered a technique to predict leptospirosis in dogs through the use of artificial intelligence. After many months of testing various models, the team has developed one that outperformed traditional testing methods and provided accurate early detection of the disease. The groundbreaking discovery was published in Journal of Veterinary Diagnostic Investigation.

“Traditional testing for Leptospira lacks sensitivity early in the disease process,” said lead author Krystle Reagan, a board-certified internal medicine specialist and assistant professor focusing on infectious diseases. “Detection also can take more than two weeks because of the need to demonstrate a rise in the level of antibodies in a blood sample. Our AI model eliminates those two roadblocks to a swift and accurate diagnosis.”

The research involved historical data of patients at the UC Davis Veterinary Medical Teaching Hospital that had been tested for leptospirosis. Routinely collected blood work from these 413 dogs was used to train an AI prediction model. Over the next year, the hospital treated an additional 53 dogs with suspected leptospirosis. The model correctly identified all nine dogs that were positive for leptospirosis (100% sensitivity). The model also correctly identified approximately 90% of the 44 dogs that were ultimately leptospirosis negative.

The goal for the model is for it to become an online resource for veterinarians to enter patient data and receive a timely prediction.

“AI-based, clinical decision making is going to be the future for many aspects of veterinary medicine,” said School of Veterinary Medicine Dean Mark Stetter. “I am thrilled to see UC Davis veterinarians and scientists leading that charge. We are committed to putting resources behind AI ventures and look forward to partnering with researchers, philanthropists, and industry to advance this science.”  

Detection model may help people

Leptospirosis is a life-threatening zoonotic disease, meaning it can transfer from animals to humans. As the disease is also difficult to diagnose in people, Reagan hopes the technology behind this groundbreaking detection model has translational ability into human medicine.

“My hope is this technology will be able to recognize cases of leptospirosis in near real time, giving clinicians and owners important information about the disease process and prognosis,” said Reagan. “As we move forward, we hope to apply AI methods to improve our ability to quickly diagnose other types of infections.”

Reagan is a founding member of the school’s Artificial Intelligence in Veterinary Medicine Interest Group comprising veterinarians promoting the use of AI in the profession. This research was done in collaboration with members of UC Davis’ Center for Data Science and Artificial Intelligence Research, led by professor of mathematics Thomas Strohmer. He and his students were involved in the algorithm building. The center strives to bring together world-renowned experts from many fields of study with top data science and AI researchers to advance data science foundations, methods, and applications.

Reagan’s group is actively pursuing AI for prediction of outcome for other types of infections, including a prediction model for antimicrobial resistant infections, which is a growing problem in veterinary and human medicine. Previously, the group developed an AI algorithm to predict Addison’s disease with an accuracy rate greater than 99%.

Other authors include Shaofeng Deng, Junda Sheng, Jamie Sebastian, Zhe Wang, Sara N. Huebner, Louise A. Wenke, Sarah R. Michalak and Jane E. Sykes. Funding support comes from the National Science Foundation.

Source: UC Davis

Study finds new links between dogs’ smell and vision

Cornell researchers have provided the first documentation that dogs’ sense of smell is integrated with their vision and other unique parts of the brain, shedding new light on how dogs experience and navigate the world.

Cornell researchers have provided the first documentation that dogs’ sense of smell is integrated with their vision and other unique parts of the brain. Photo credit: Michael Carroll/CVM

“We’ve never seen this connection between the nose and the occipital lobe, functionally the visual cortex in dogs, in any species,” said Pip Johnson, assistant professor in the Department of Clinical Sciences in the College of Veterinary Medicine and senior author of “Extensive Connections of the Canine Olfactory Pathway Revealed by Tractography and Dissection,” published July 11 in the Journal of Neuroscience.

“It makes a ton of sense in dogs,” she said. “When we walk into a room, we primarily use our vision to work out where the door is, who’s in the room, where the table is. Whereas in dogs, this study shows that olfaction is really integrated with vision in terms of how they learn about their environment and orient themselves in it.”

Erica Andrews, a former analyst in Johnson’s lab, is the paper’s first author and currently works in canine aging research.

Johnson and her team performed MRI scans on 23 healthy dogs and used diffusion tensor imaging, an advanced neuroimaging technique, to locate the dog brain’s white matter pathways, the information highways of the brain. They found connections between the olfactory bulb and the limbic system and piriform lobe, where the brain processes memory and emotion, which are similar to those in humans, as well as never-documented connections to the spinal cord and the occipital lobe that are not found in humans.

“It was really consistent,” Johnson said. “And size-wise, these tracts were really dramatic compared to what is described in the human olfactory system, more like what you’d see in our visual systems.”

Tractography, a 3D-modeling process, allowed Johnson and her team to map and virtually dissect the white matter tracts. The findings in the digital images were later confirmed by a co-author and white matter expert at Johns Hopkins University.

Johnson said the research corroborates her clinical experiences with blind dogs, who function remarkably well. “They can still play fetch and navigate their surroundings much better than humans with the same condition,” Johnson said. “Knowing there’s that information freeway going between those two areas could be hugely comforting to owners of dogs with incurable eye diseases.”

Identifying new connections in the brain also opens up new lines of questioning. “To see this variation in the brain allows us to see what’s possible in the mammalian brain and to wonder – maybe we have a vestigial connection between those two areas from when we were more ape-like and scent-oriented, or maybe other species have significant variations that we haven’t explored,” Johnson said.

Johnson plans to examine the olfactory system’s structure in the brains of cats and horses, which aligns with the broader goals of her research program – to leverage the most advanced imaging techniques, used commonly in human clinical research, to better understand animal brain physiology and disease.

Source: Cornell University Chronicle